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Deep Learning Method for Computing Committor Functions with Adaptive Sampling

Lin, Bo, Ren, Weiqing

arXiv.org Artificial Intelligence

The committor function is a central object for quantifying the transitions between metastable states of dynamical systems. Recently, a number of computational methods based on deep neural networks have been developed for computing the high-dimensional committor function. The success of the methods relies on sampling adequate data for the transition, which still is a challenging task for complex systems at low temperatures. In this work, we propose a deep learning method with two novel adaptive sampling schemes (I and II). In the two schemes, the data are generated actively with a modified potential where the bias potential is constructed from the learned committor function. We theoretically demonstrate the advantages of the sampling schemes and show that the data in sampling scheme II are uniformly distributed along the transition tube. This makes a promising method for studying the transition of complex systems. The efficiency of the method is illustrated in high-dimensional systems including the alanine dipeptide and a solvated dimer system.


Computing Transition Pathways for the Study of Rare Events Using Deep Reinforcement Learning

Lin, Bo, Zhong, Yangzheng, Ren, Weiqing

arXiv.org Machine Learning

Understanding the transition events between metastable states in complex systems is an important subject in the fields of computational physics, chemistry and biology. The transition pathway plays an important role in characterizing the mechanism underlying the transition, for example, in the study of conformational changes of bio-molecules. In fact, computing the transition pathway is a challenging task for complex and high-dimensional systems. In this work, we formulate the path-finding task as a cost minimization problem over a particular path space. The cost function is adapted from the Freidlin-Wentzell action functional so that it is able to deal with rough potential landscapes. The path-finding problem is then solved using a actor-critic method based on the deep deterministic policy gradient algorithm (DDPG). The method incorporates the potential force of the system in the policy for generating episodes and combines physical properties of the system with the learning process for molecular systems. The exploitation and exploration nature of reinforcement learning enables the method to efficiently sample the transition events and compute the globally optimal transition pathway. We illustrate the effectiveness of the proposed method using three benchmark systems including an extended Mueller system and the Lennard-Jones system of seven particles.